Last updated on 2025-12-16 09:50:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.7 | 138.60 | 531.33 | 669.93 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.7 | 93.70 | 353.99 | 447.69 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.7 | 281.00 | 868.96 | 1149.96 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.8 | 300.00 | 892.45 | 1192.45 | OK | |
| r-devel-windows-x86_64 | 1.7 | 160.00 | 472.00 | 632.00 | OK | |
| r-patched-linux-x86_64 | 1.7 | 142.68 | 507.54 | 650.22 | OK | |
| r-release-linux-x86_64 | 1.7 | 140.75 | 496.59 | 637.34 | ERROR | |
| r-release-macos-arm64 | 1.8 | 29.00 | 118.00 | 147.00 | OK | |
| r-release-macos-x86_64 | 1.8 | 101.00 | 312.00 | 413.00 | OK | |
| r-release-windows-x86_64 | 1.7 | 156.00 | 469.00 | 625.00 | OK | |
| r-oldrel-macos-arm64 | 1.8 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.8 | 98.00 | 341.00 | 439.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.7 | 195.00 | 626.00 | 821.00 | OK |
Version: 1.7
Check: examples
Result: ERROR
Running examples in ‘PRECAST-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CreatePRECASTObject
> ### Title: Create the PRECAST object with preprocessing step.
> ### Aliases: CreatePRECASTObject
>
> ### ** Examples
>
> data(PRECASTObj)
> library(Seurat)
Loading required package: SeuratObject
Loading required package: sp
Attaching package: ‘SeuratObject’
The following objects are masked from ‘package:base’:
intersect, t
> seuList <- PRECASTObj@seulist
> ## Check the input of seuList for create PRECAST object.
> ## Check the default assay for each data batch
> lapply(seuList, DefaultAssay)
[[1]]
[1] "RNA"
[[2]]
[1] "RNA"
> ## Check the spatial coordinates in the meta data named "row" and "col".
> head(seuList[[1]]@meta.data)
orig.ident nCount_RNA nFeature_RNA row col true_cluster
cell1_1 cell1 10004 55 1 1 2
cell1_2 cell1 12614 54 2 1 2
cell1_3 cell1 18233 57 3 1 2
cell1_4 cell1 1726 50 4 1 7
cell1_5 cell1 3451 53 5 1 7
cell1_6 cell1 134457 60 6 1 6
> ## Then create PRECAST object using this seuList.
> ## For convenience, we show the user-specified genes' list for creating PRECAST object.
> ## Users can use SVGs from SPARK-X or HVGs.
> PRECASTObj2 <- CreatePRECASTObject(seuList,
+ customGenelist= row.names(seuList[[1]]), verbose=FALSE)
Error in FUN(X[[i]], ...) :
filter_gene: Seuat object must provide slots count or data in assay!
Calls: CreatePRECASTObject -> <Anonymous> -> lapply -> FUN
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.7
Check: examples
Result: ERROR
Running examples in ‘PRECAST-Ex.R’ failed
The error most likely occurred in:
> ### Name: CreatePRECASTObject
> ### Title: Create the PRECAST object with preprocessing step.
> ### Aliases: CreatePRECASTObject
>
> ### ** Examples
>
> data(PRECASTObj)
> library(Seurat)
Loading required package: SeuratObject
Loading required package: sp
Attaching package: ‘SeuratObject’
The following objects are masked from ‘package:base’:
intersect, t
> seuList <- PRECASTObj@seulist
> ## Check the input of seuList for create PRECAST object.
> ## Check the default assay for each data batch
> lapply(seuList, DefaultAssay)
[[1]]
[1] "RNA"
[[2]]
[1] "RNA"
> ## Check the spatial coordinates in the meta data named "row" and "col".
> head(seuList[[1]]@meta.data)
orig.ident nCount_RNA nFeature_RNA row col true_cluster
cell1_1 cell1 10004 55 1 1 2
cell1_2 cell1 12614 54 2 1 2
cell1_3 cell1 18233 57 3 1 2
cell1_4 cell1 1726 50 4 1 7
cell1_5 cell1 3451 53 5 1 7
cell1_6 cell1 134457 60 6 1 6
> ## Then create PRECAST object using this seuList.
> ## For convenience, we show the user-specified genes' list for creating PRECAST object.
> ## Users can use SVGs from SPARK-X or HVGs.
> PRECASTObj2 <- CreatePRECASTObject(seuList,
+ customGenelist= row.names(seuList[[1]]), verbose=FALSE)
Error in FUN(X[[i]], ...) :
filter_gene: Seuat object must provide slots count or data in assay!
Calls: CreatePRECASTObject -> <Anonymous> -> lapply -> FUN
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.8
Check: package dependencies
Result: ERROR
Package required but not available: ‘scater’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Version: 1.8
Check: installed package size
Result: NOTE
installed size is 11.9Mb
sub-directories of 1Mb or more:
data 2.2Mb
libs 8.9Mb
Flavor: r-oldrel-macos-x86_64