Last updated on 2025-10-21 09:48:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.5 | 46.26 | 384.49 | 430.75 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.0.5 | 34.17 | 271.24 | 305.41 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0.5 | 708.65 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.5 | 642.77 | ERROR | |||
| r-devel-windows-x86_64 | 0.0.5 | 48.00 | 324.00 | 372.00 | ERROR | |
| r-patched-linux-x86_64 | 0.0.5 | 45.66 | 357.85 | 403.51 | ERROR | |
| r-release-linux-x86_64 | 0.0.5 | 44.54 | 356.34 | 400.88 | ERROR | |
| r-release-macos-arm64 | 0.0.5 | 6.00 | ERROR | |||
| r-release-macos-x86_64 | 0.0.5 | 7.00 | ERROR | |||
| r-release-windows-x86_64 | 0.0.5 | 48.00 | 326.00 | 374.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.0.5 | 130.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.0.5 | 274.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.0.5 | 67.00 | 426.00 | 493.00 | ERROR |
Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘RVA.Rmd’ using rmarkdown
Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. ├─knitr::kable(head(cutoff.result.list[[1]]))
2. ├─utils::head(cutoff.result.list[[1]])
3. ├─cutoff.result.list[[1]]
4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘RVA.Rmd’
SUMMARY: processing the following file failed:
‘RVA.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.0.5
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
calc.cfb.html:67:1 (calc.cfb.Rd:25): Warning: missing </ul> before </div>
get.cpm.colors.html:46:1 (get.cpm.colors.Rd:10): Warning: missing </ul> before </div>
get.cutoff.df.html:65:1 (get.cutoff.df.Rd:19): Warning: missing </ul> before </div>
get.cutoff.ggplot.html:57:1 (get.cutoff.ggplot.Rd:15): Warning: missing </ul> before </div>
make.cutoff.plotly.html:49:1 (make.cutoff.plotly.Rd:10): Warning: missing </ul> before </div>
plot_cutoff_single.html:64:1 (plot_cutoff_single.Rd:18): Warning: missing </ul> before </div>
plot_heatmap.cfb.html:62:1 (plot_heatmap.cfb.Rd:20): Warning: missing </ul> before </div>
plot_heatmap.cpm.html:62:1 (plot_heatmap.cpm.Rd:20): Warning: missing </ul> before </div>
produce.cutoff.message.html:86:1 (produce.cutoff.message.Rd:35): Warning: missing </ul> before </div>
produce.cutoff.warning.html:51:1 (produce.cutoff.warning.Rd:12): Warning: missing </ul> before </div>
reformat.ensembl.html:56:1 (reformat.ensembl.Rd:16): Warning: missing </ul> before </div>
transform.geneid.html:64:1 (transform.geneid.Rd:20): Warning: missing </ul> before </div>
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.0.5
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘XML’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘RVA.Rmd’ using rmarkdown
Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. ├─knitr::kable(head(cutoff.result.list[[1]]))
2. ├─utils::head(cutoff.result.list[[1]])
3. ├─cutoff.result.list[[1]]
4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘RVA.Rmd’
SUMMARY: processing the following file failed:
‘RVA.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.0.5
Check: package dependencies
Result: ERROR
Packages required but not available: 'GSVAdata', 'org.Hs.eg.db'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 0.0.5
Check: package dependencies
Result: ERROR
Package required but not available: ‘GSVAdata’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-x86_64