CRAN Package Check Results for Package pagoda2

Last updated on 2025-10-21 09:48:40 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.13 117.58 132.68 250.26 OK
r-devel-linux-x86_64-debian-gcc 1.0.13 72.90 93.35 166.25 NOTE
r-devel-windows-x86_64 1.0.13 134.00 156.00 290.00 OK
r-patched-linux-x86_64 1.0.13 112.84 123.79 236.63 OK
r-release-linux-x86_64 1.0.13 114.28 121.77 236.05 OK
r-release-macos-arm64 1.0.13 88.00 OK
r-release-macos-x86_64 1.0.13 146.00 OK
r-release-windows-x86_64 1.0.13 130.00 158.00 288.00 OK
r-oldrel-macos-arm64 1.0.13 101.00 NOTE
r-oldrel-macos-x86_64 1.0.13 154.00 NOTE
r-oldrel-windows-x86_64 1.0.13 164.00 198.00 362.00 OK

Check Details

Version: 1.0.13
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: Pagoda2.html:237:1 (Pagoda2.Rd:199): Warning: <h5> anchor "Usage" already defined Pagoda2.html:253:1 (Pagoda2.Rd:213): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:282:1 (Pagoda2.Rd:236): Warning: <h5> anchor "Returns" already defined Pagoda2.html:300:1 (Pagoda2.Rd:246): Warning: <h5> anchor "Usage" already defined Pagoda2.html:320:1 (Pagoda2.Rd:264): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:357:1 (Pagoda2.Rd:295): Warning: <h5> anchor "Returns" already defined Pagoda2.html:364:1 (Pagoda2.Rd:298): Warning: <h5> anchor "Examples" already defined Pagoda2.html:394:1 (Pagoda2.Rd:323): Warning: <h5> anchor "Usage" already defined Pagoda2.html:413:1 (Pagoda2.Rd:340): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:448:1 (Pagoda2.Rd:369): Warning: <h5> anchor "Returns" already defined Pagoda2.html:455:1 (Pagoda2.Rd:372): Warning: <h5> anchor "Examples" already defined Pagoda2.html:487:1 (Pagoda2.Rd:399): Warning: <h5> anchor "Usage" already defined Pagoda2.html:502:1 (Pagoda2.Rd:412): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:530:1 (Pagoda2.Rd:434): Warning: <h5> anchor "Returns" already defined Pagoda2.html:547:1 (Pagoda2.Rd:443): Warning: <h5> anchor "Usage" already defined Pagoda2.html:563:1 (Pagoda2.Rd:453): Warning: <h5> anchor "Usage" already defined Pagoda2.html:580:1 (Pagoda2.Rd:468): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:611:1 (Pagoda2.Rd:493): Warning: <h5> anchor "Returns" already defined Pagoda2.html:628:1 (Pagoda2.Rd:502): Warning: <h5> anchor "Usage" already defined Pagoda2.html:642:1 (Pagoda2.Rd:514): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:667:1 (Pagoda2.Rd:533): Warning: <h5> anchor "Returns" already defined Pagoda2.html:684:1 (Pagoda2.Rd:542): Warning: <h5> anchor "Usage" already defined Pagoda2.html:699:1 (Pagoda2.Rd:555): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:726:1 (Pagoda2.Rd:576): Warning: <h5> anchor "Returns" already defined Pagoda2.html:743:1 (Pagoda2.Rd:585): Warning: <h5> anchor "Usage" already defined Pagoda2.html:759:1 (Pagoda2.Rd:599): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:788:1 (Pagoda2.Rd:622): Warning: <h5> anchor "Returns" already defined Pagoda2.html:810:1 (Pagoda2.Rd:636): Warning: <h5> anchor "Usage" already defined Pagoda2.html:830:1 (Pagoda2.Rd:654): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:867:1 (Pagoda2.Rd:685): Warning: <h5> anchor "Returns" already defined Pagoda2.html:884:1 (Pagoda2.Rd:694): Warning: <h5> anchor "Usage" already defined Pagoda2.html:895:1 (Pagoda2.Rd:703): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:914:1 (Pagoda2.Rd:716): Warning: <h5> anchor "Returns" already defined Pagoda2.html:931:1 (Pagoda2.Rd:725): Warning: <h5> anchor "Usage" already defined Pagoda2.html:953:1 (Pagoda2.Rd:745): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:994:1 (Pagoda2.Rd:780): Warning: <h5> anchor "Returns" already defined Pagoda2.html:1011:1 (Pagoda2.Rd:789): Warning: <h5> anchor "Usage" already defined Pagoda2.html:1026:1 (Pagoda2.Rd:802): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:1053:1 (Pagoda2.Rd:823): Warning: <h5> anchor "Returns" already defined Pagoda2.html:1070:1 (Pagoda2.Rd:832): Warning: <h5> anchor "Usage" already defined Pagoda2.html:1080:1 (Pagoda2.Rd:840): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:1097:1 (Pagoda2.Rd:851): Warning: <h5> anchor "Returns" already defined Pagoda2.html:1114:1 (Pagoda2.Rd:860): Warning: <h5> anchor "Usage" already defined Pagoda2.html:1120:1 (Pagoda2.Rd:864): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:1135:1 (Pagoda2.Rd:873): Warning: <h5> anchor "Returns" already defined Pagoda2.html:1152:1 (Pagoda2.Rd:882): Warning: <h5> anchor "Usage" already defined Pagoda2.html:1172:1 (Pagoda2.Rd:900): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:1209:1 (Pagoda2.Rd:931): Warning: <h5> anchor "Returns" already defined Pagoda2.html:1227:1 (Pagoda2.Rd:941): Warning: <h5> anchor "Usage" already defined Pagoda2.html:1249:1 (Pagoda2.Rd:961): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:1290:1 (Pagoda2.Rd:996): Warning: <h5> anchor "Returns" already defined Pagoda2.html:1307:1 (Pagoda2.Rd:1005): Warning: <h5> anchor "Usage" already defined Pagoda2.html:1335:1 (Pagoda2.Rd:1031): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:1388:1 (Pagoda2.Rd:1078): Warning: <h5> anchor "Returns" already defined Pagoda2.html:1406:1 (Pagoda2.Rd:1088): Warning: <h5> anchor "Usage" already defined Pagoda2.html:1433:1 (Pagoda2.Rd:1113): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:1484:1 (Pagoda2.Rd:1158): Warning: <h5> anchor "Returns" already defined Pagoda2.html:1501:1 (Pagoda2.Rd:1167): Warning: <h5> anchor "Usage" already defined Pagoda2.html:1523:1 (Pagoda2.Rd:1187): Warning: <h5> anchor "Arguments" already defined Pagoda2.html:1565:1 (Pagoda2.Rd:1223): Warning: <h5> anchor "Returns" already defined Pagoda2.html:1582:1 (Pagoda2.Rd:1232): Warning: <h5> anchor "Usage" already defined Pagoda2.html:1588:1 (Pagoda2.Rd:1236): Warning: <h5> anchor "Arguments" already defined diffExprOnP2FromWebSelection.html:60:1 (diffExprOnP2FromWebSelection.Rd:17): Warning: missing </ul> before </div> diffExprOnP2FromWebSelectionOneGroup.html:56:1 (diffExprOnP2FromWebSelectionOneGroup.Rd:15): Warning: missing </ul> before </div> dot-onUnload.html:46:1 (dot-onUnload.Rd:10): Warning: missing </ul> before </div> p2.generate.dr.go.web.html:50:1 (p2.generate.dr.go.web.Rd:12): Warning: missing </ul> before </div> p2.generate.go.html:69:1 (p2.generate.go.Rd:25): Warning: missing </ul> before </div> p2.generate.go.web.html:63:1 (p2.generate.go.web.Rd:21): Warning: missing </ul> before </div> p2.generate.go.web.fromGOEnv.html:46:1 (p2.generate.go.web.fromGOEnv.Rd:10): Warning: missing </ul> before </div> p2.generate.human.go.web.html:50:1 (p2.generate.human.go.web.Rd:12): Warning: missing </ul> before </div> p2.generate.mouse.go.web.html:50:1 (p2.generate.mouse.go.web.Rd:12): Warning: missing </ul> before </div> p2ViewPagodaApp.html:257:1 (p2ViewPagodaApp.Rd:155): Warning: missing </ul> before </div> p2ViewPagodaApp.html:158:1 (p2ViewPagodaApp.Rd:100): Warning: <h5> anchor "Usage" already defined p2ViewPagodaApp.html:164:1 (p2ViewPagodaApp.Rd:104): Warning: <h5> anchor "Arguments" already defined p2ViewPagodaApp.html:181:1 (p2ViewPagodaApp.Rd:115): Warning: <h5> anchor "Returns" already defined p2ViewPagodaApp.html:198:1 (p2ViewPagodaApp.Rd:124): Warning: <h5> anchor "Usage" already defined p2ViewPagodaApp.html:204:1 (p2ViewPagodaApp.Rd:128): Warning: <h5> anchor "Arguments" already defined p2ViewPagodaApp.html:217:1 (p2ViewPagodaApp.Rd:135): Warning: <h5> anchor "Returns" already defined p2ViewPagodaApp.html:234:1 (p2ViewPagodaApp.Rd:144): Warning: <h5> anchor "Usage" already defined p2ViewPagodaApp.html:240:1 (p2ViewPagodaApp.Rd:148): Warning: <h5> anchor "Arguments" already defined pagoda2WebApp_call.html:40:1 (pagoda2WebApp_call.Rd:7): Warning: missing </ul> before </div> readPagoda2SelectionFile.html:50:1 (readPagoda2SelectionFile.Rd:12): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.13
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'org.Dr.eg.db', 'org.Mm.eg.db' Flavor: r-oldrel-macos-arm64

Version: 1.0.13
Check: installed package size
Result: NOTE installed size is 7.0Mb sub-directories of 1Mb or more: libs 5.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64