Last updated on 2026-03-24 08:52:59 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.13 | 84.30 | 185.28 | 269.58 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.13 | 55.66 | 148.40 | 204.06 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.13 | 116.00 | 272.19 | 388.19 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.13 | 152.00 | 205.75 | 357.75 | ERROR | |
| r-devel-macos-arm64 | 1.0.13 | 19.00 | 38.00 | 57.00 | OK | |
| r-devel-windows-x86_64 | 1.0.13 | 94.00 | 212.00 | 306.00 | OK | |
| r-patched-linux-x86_64 | 1.0.13 | 67.76 | 169.15 | 236.91 | OK | |
| r-release-linux-x86_64 | 1.0.13 | 66.25 | 168.60 | 234.85 | OK | |
| r-release-macos-arm64 | 1.0.13 | 16.00 | 48.00 | 64.00 | OK | |
| r-release-macos-x86_64 | 1.0.13 | 62.00 | 384.00 | 446.00 | OK | |
| r-release-windows-x86_64 | 1.0.13 | 81.00 | 206.00 | 287.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.13 | 18.00 | 92.00 | 110.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.0.13 | 61.00 | 373.00 | 434.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.0.13 | 103.00 | 281.00 | 384.00 | NOTE |
Version: 1.0.13
Check: tests
Result: ERROR
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ tinytest::test_package("statgenGWAS")
+ }
test_GWAS.R................... 0 tests
test_GWAS.R................... 0 tests
test_GWAS.R................... 0 tests
test_GWAS.R................... 0 tests
test_GWAS.R................... 1 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 2 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 2 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 3 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 4 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 5 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 6 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 7 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 8 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 9 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 10 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 11 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 11 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 12 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 13 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 14 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 15 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 15 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 16 tests <1b>[0;32mOK<1b>[0m
test_GWAS.R................... 17 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.3s<1b>[0m
test_STG.R.................... 0 tests
test_STG.R.................... 0 tests
test_STG.R.................... 0 tests
test_STG.R.................... 0 tests
test_STG.R.................... 0 tests
test_STG.R.................... 0 tests
test_STG.R.................... 0 tests
test_STG.R.................... 0 tests
test_STG.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 8 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 13 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 14 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 15 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 16 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 18 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 19 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 20 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 21 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 22 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 23 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 24 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 25 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 26 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 27 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 28 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 29 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 30 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 31 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 32 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 33 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 34 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 35 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 36 tests <1b>[0;32mOK<1b>[0m
test_STG.R.................... 37 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m2.5s<1b>[0m
test_STGHelper.R.............. 0 tests
test_STGHelper.R.............. 0 tests
test_STGHelper.R.............. 0 tests
test_STGHelper.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 11 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 12 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 13 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 14 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 14 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 15 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 16 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 17 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 18 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 18 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 19 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 20 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 20 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 20 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 21 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 22 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 23 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 24 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 25 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 26 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 27 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 28 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 29 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 30 tests <1b>[0;32mOK<1b>[0m
test_STGHelper.R.............. 31 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m44ms<1b>[0m
test_STGoptions.R............. 0 tests
test_STGoptions.R............. 1 tests <1b>[0;32mOK<1b>[0m Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'Matrix'
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.13
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘GWAS.Rmd’ using rmarkdown
Quitting from GWAS.Rmd:406-413 [stgSNPNR]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'Matrix'
---
Backtrace:
▆
1. ├─statgenGWAS::runSingleTraitGwas(...)
2. │ └─statgenGWAS:::estVarComp(...)
3. │ └─statgenGWAS:::estVarCompNR(...)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. └─base (local) withOneRestart(expr, restarts[[1L]])
9. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GWAS.Rmd' failed with diagnostics:
there is no package called 'Matrix'
--- failed re-building ‘GWAS.Rmd’
SUMMARY: processing the following file failed:
‘GWAS.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.13
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavor: r-oldrel-macos-arm64
Version: 1.0.13
Check: installed package size
Result: NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
data 2.8Mb
libs 5.0Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.13
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘snpStats’
Flavor: r-oldrel-macos-arm64