CRAN Package Check Results for Package statgenHTP

Last updated on 2026-03-24 08:52:59 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.0.9.1	13.62	429.52	443.14	OK
r-devel-linux-x86_64-debian-gcc	1.0.9.1	8.13	301.42	309.55	OK
r-devel-linux-x86_64-fedora-clang	1.0.9.1	23.00	651.03	674.03	OK
r-devel-linux-x86_64-fedora-gcc	1.0.9.1	22.00	333.58	355.58	ERROR
r-devel-macos-arm64	1.0.9.1	3.00	96.00	99.00	OK
r-devel-windows-x86_64	1.0.9.1	18.00	415.00	433.00	OK
r-patched-linux-x86_64	1.0.9.1	13.78	411.01	424.79	OK
r-release-linux-x86_64	1.0.9.1	12.97	411.37	424.34	OK
r-release-macos-arm64	1.0.9.1				OK
r-release-macos-x86_64	1.0.9.1	9.00	380.00	389.00	OK
r-release-windows-x86_64	1.0.9.1	18.00	415.00	433.00	OK
r-oldrel-macos-arm64	1.0.9.1				NOTE
r-oldrel-macos-x86_64	1.0.9.1	10.00	348.00	358.00	NOTE
r-oldrel-windows-x86_64	1.0.9.1	23.00	570.00	593.00	NOTE

Check Details

Version: 1.0.9.1
Check: examples
Result: ERROR Running examples in ‘statgenHTP-Ex.R’ failed The error most likely occurred in: > ### Name: estimateSplineParameters > ### Title: Extract estimates from fitted splines. > ### Aliases: estimateSplineParameters > > ### ** Examples > > ### Estimate parameters for fitted P-splines. > > ## Run the function to fit P-splines on a subset of genotypes. > subGeno <- c("G160", "G151") > fit.spline <- fitSpline(inDat = spatCorrectedVator, + trait = "EffpsII_corr", + genotypes = subGeno, + knots = 50) Error in loadNamespace(x) : there is no package called ‘Matrix’ Calls: fitSpline ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.9.1
Check: tests
Result: ERROR Running ‘tinytest.R’ [50s/65s] Running the tests in ‘tests/tinytest.R’ failed. Complete output: > > if ( requireNamespace("tinytest", quietly=TRUE) ){ + tinytest::test_package("statgenHTP") + } test_TP.R..................... 0 tests test_TP.R..................... 0 tests test_TP.R..................... 1 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 2 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 3 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 4 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 5 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 6 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 7 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 8 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 9 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 9 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 10 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 11 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 11 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 11 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 12 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 13 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 13 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 14 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 15 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 16 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 17 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 18 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 19 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 20 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 21 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 21 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 22 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 23 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 24 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 25 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 26 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 27 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 28 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 28 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 29 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 30 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 31 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 32 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 33 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 34 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 35 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 35 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 36 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 37 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 38 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 38 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 38 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 39 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 40 tests <1b>[0;32mOK<1b>[0m test_TP.R..................... 41 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.1s<1b>[0m test_TPPlots.R................ 0 tests test_TPPlots.R................ 0 tests test_TPPlots.R................ 1 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 1 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 1 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 2 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 2 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 3 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 4 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 5 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 5 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 5 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 6 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 6 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 7 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 7 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 8 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 8 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 9 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 9 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 9 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 9 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 10 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 11 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 11 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 11 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 12 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 13 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 14 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 14 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 15 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 16 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 17 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 18 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 19 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 19 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 20 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 21 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 22 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 22 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 23 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 23 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 23 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 23 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 24 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 25 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 26 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 27 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 28 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 28 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 29 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 30 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 31 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 32 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 33 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 33 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 34 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 35 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 36 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 37 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 38 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 39 tests <1b>[0;32mOK<1b>[0m test_TPPlots.R................ 39 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m58.7s<1b>[0m test_detectSerieOut.R......... 0 tests test_detectSerieOut.R......... 0 tests test_detectSerieOut.R......... 0 tests test_detectSerieOut.R......... 0 tests test_detectSerieOut.R......... 0 tests test_detectSerieOut.R......... 0 tests test_detectSerieOut.R......... 0 tests test_detectSerieOut.R......... 0 tests test_detectSerieOut.R......... 1 tests <1b>[0;32mOK<1b>[0m test_detectSerieOut.R......... 2 tests <1b>[0;32mOK<1b>[0m Error in eval(expr, envir = e) : object 'splineRes' not found Calls: <Anonymous> -> run_test_dir -> lapply -> FUN -> eval -> eval In addition: Warning message: 125 failed to parse. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.9.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Overview_HTP.Rmd’ using rmarkdown Quitting from Overview_HTP.Rmd:320-334 [fitSplineVator] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'Matrix' --- Backtrace: ▆ 1. ├─statgenHTP::fitSpline(...) 2. │ └─base::lapply(...) 3. │ └─statgenHTP (local) FUN(X[[i]], ...) 4. │ └─LMMsolver::LMMsolve(...) 5. │ └─LMMsolver:::constructFixed(fixed, data) 6. └─base::loadNamespace(x) 7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 8. └─base (local) withOneRestart(expr, restarts[[1L]]) 9. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Overview_HTP.Rmd' failed with diagnostics: there is no package called 'Matrix' --- failed re-building ‘Overview_HTP.Rmd’ SUMMARY: processing the following file failed: ‘Overview_HTP.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.9.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘asreml’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.9.1
Check: installed package size
Result: NOTE installed size is 5.0Mb sub-directories of 1Mb or more: data 3.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64