Package: seqminer
Type: Package
Title: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
        Format and BGEN Format) into R
Version: 9.9
Date: 2026-02-23
Authors@R: c(person("Xiaowei", "Zhan", email = "zhanxw@gmail.com", role = c("aut", "cre")),
           person("Dajiang", "Liu", email = "dajiang.liu@gmail.com", role = "aut"),
           person("Attractive Chaos", email = "attractor@live.co.uk", role = "cph", comment = "We have used the following software and made minimal necessary changes: Tabix, Heng Li <lh3@live.co.uk> (MIT license). We removed standard IO related functions, e.g. printf, fprintf ; also changed its un-safe pointer arithmetics."),	
           person("Broad Institute / Massachusetts Institute of Technology", role = "cph"),
           person("Genome Research Ltd (GRL)", role = "cph"),
	       person("Facebook, Inc", role = "cph"),
           person("D. Richard Hipp", role = "cph"))
Maintainer: Xiaowei Zhan <zhanxw@gmail.com>
Description: Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read 'RareMETAL' summary statistics files; (3) read tables from a 'tabix'-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.
Copyright: We have used the following software and made minimal
        necessary changes: tabix, Heng Li <lh3@live.co.uk> (MIT
        license), SQLite (Public Domain), Zstandard (BSD license). For
        tabix, we removed standard IO related functions, e.g. printf,
        fprintf ; also changed its un-safe pointer arithmetics. For
        zstandard, we removed compiler (clang, MSVC) specific
        preprocessing flags.
License: GPL | file LICENSE
URL: http://zhanxw.github.io/seqminer/
BugReports: https://github.com/zhanxw/seqminer/issues
Packaged: 2026-02-23 19:57:27 UTC; zhanxw
Repository: CRAN
Suggests: testthat, SKAT
SystemRequirements: zlib headers and libraries, GNU make, optionally
        also bzip2 and POSIX-compliant regex functions.
NeedsCompilation: yes
RoxygenNote: 7.2.3
Encoding: UTF-8
Author: Xiaowei Zhan [aut, cre],
  Dajiang Liu [aut],
  Attractive Chaos [cph] (We have used the following software and made
    minimal necessary changes: Tabix, Heng Li <lh3@live.co.uk> (MIT
    license). We removed standard IO related functions, e.g. printf,
    fprintf ; also changed its un-safe pointer arithmetics.),
  Broad Institute / Massachusetts Institute of Technology [cph],
  Genome Research Ltd (GRL) [cph],
  Facebook, Inc [cph],
  D. Richard Hipp [cph]
Date/Publication: 2026-02-24 09:40:02 UTC
Built: R 4.4.3; x86_64-w64-mingw32; 2026-03-18 17:43:36 UTC; windows
Archs: x64
