| cn.mat | DNA copy number data from 98 head and neck squamous cell carcinoma (HNSC) patients |
| cn.region.heatmap | A Function for Creating a Heatmap of DNA Copy Number Data |
| corr.compute | A Function for Computing a Vector of Pearson Correlation Coefficients |
| corr.list.compute | A Function for Creating a List of Pearson Correlation Coefficients |
| data.prep | A Function for Preparing mRNAseq and Copy Number Data Matrices |
| exp.mat | Gene expression data from 100 head and neck squamous cell carcinoma (HNSC) patients |
| gene.annot | Gene annotation data (hg38) |
| perm.significance | A Function for Computing a Vector of Pearson Correlation Coefficients |
| perm.significance.list.compute | A Function for Creating a List of Pearson Correlation Coefficients |
| sample.annot | Sample annotation data |
| smooth.genome.plot | A Function for Plotting Smoothed Pearson Correlation Coefficients Across Multiple Chromosomes |
| smooth.region.plot | A Function for Plotting Smoothed Pearson Correlation Coefficients Genomewide |
| tcga.cn.convert | A Function for Reformatting TCGA DNA Copy Number Matrices |
| tcga.exp.convert | A Function for Reformatting TCGA mRNA Expression Matrices |
| unsmooth.region.plot | A Function for Plotting Pearson Correlation Coefficients in a Given Genomic Region |