Population-Level Cell-Cell Communication Analysis Tools

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Documentation for package ‘PopComm’ version 0.1.0.1

Help Pages

boxplot_lr_group_comparison Boxplot Comparison of Ligand-Receptor Interaction Scores Across Groups
circle_plot Plot Circular Ligand-Receptor Interaction Network
dotplot_lr_continuous_group Dotplot of Ligand-Receptor Interaction Scores Against Continuous Group Variable
dot_plot Create Ligand-Receptor Interaction Dot Plot
filtered_lr_eg Example for filtered_lr
filter_lr_all Filter and Analyze Ligand-Receptor Pair Correlations (All Cell Types)
filter_lr_single Filter and Analyze Ligand-Receptor Pair Correlations (Specified Sender and Receiver)
heatmap_sample Generate Heatmap of Ligand-Receptor Interaction Scores
lr_db Ligand-Receptor Pair Database
lr_linear_model_discrete Compare Ligand-Receptor Interaction Scores with Group Variable using Linear Regression
lr_scores_eg Example for lr_scores
metadata_eg Example for metadata
one_step_all Analyze Ligand-Receptor Pair Correlations and Projection Scores (Across All Cell Types)
one_step_single Analyze Ligand-Receptor Pair Correlations and Projection Scores (Specified Sender and Receiver)
pca_sample Generate PCA of Ligand-Receptor Interaction Scores
score_lr_all Analyze Ligand-Receptor Projection Scores (Across All Cell Types)
score_lr_single Analyze Ligand-Receptor Projection Scores (Specified Sender and Receiver)