| dc3net | Differential C3NET |
| dc3netcom | Find Common Network |
| dc3netdif | Find Differential Network |
| geneNames | Gene Names |
| maxofMIM | Find Max Partner For Each Gene |
| normalData | Example Prostate Cancer Normal Gene Expression Dataset |
| orderList | Order The List of Interactions |
| probSameFilt | Filter Probes of The Same Gene |
| rankList | Find Rank List |
| tumorData | Example Prostate Cancer Tumor Gene Expression Dataset |
| uniqNet | Unique Network |