Geographical Risk Analysis Based on Habitat Connectivity

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Documentation for package ‘geohabnet’ version 2.2

• DESCRIPTION file.
• Package NEWS.

Help Pages

.grast_ro	GlobalRast class
.indices	Internal function to extract risk indices from a list of crop rasters.
.model_ob	GeoModel class
.rast_ro	GeoRaster class
betweeness	Calculation on network metrics a.k.a centralities.
closeness	Calculation on network metrics a.k.a centralities.
connectivity	Calculate and plot maps of habitat connectivity
degree	Calculation on network metrics a.k.a centralities.
dist_methods	Distance methods supported
ev	Calculation on network metrics a.k.a centralities.
GeoModel-class	GeoModel class
GeoNetwork-class	GeoNetwork
GeoRasters-class	GeoRaster class
geoscale_param	Get geographical scales from the parameters
get_parameters	Get Parameters
get_rasters	Get rasters object from parameters See host object in 'get_parameters()' or 'load_parameters()'.
GlobalRast-class	GlobalRast class
global_scales	Global geographical extent
Gmap-class	Gmap class
gplot	Plot a Raster* object
habitat_density<-	Set the habitat density.
habitat_density<--method	GeoNetwork
hci_diff	Calculate difference map
hci_mean	Calculate mean of habitat connectivity in a region
hci_variance	Calculate variance of habitat connectivity in a region
inv_powerlaw	Dispersal kernels
load_parameters	Load Parameters from YAML File
msean	Sensitivity analysis across maps of habitat connectivity
msean_onrast	Run sensitivity analysis
ndplot	Network density plot
ndplot-method	Network density
neg_expo	Dispersal kernels
nn_sum	Calculation on network metrics a.k.a centralities.
node_strength	Calculation on network metrics a.k.a centralities.
pagerank	Calculation on network metrics a.k.a centralities.
reset_params	Reset parameters.yaml
reso	Get resolution value
RiskMap-class	RiskMap class
risk_indices	Get risk indices
sa_onrasters	Run sensitivity analysis
sean	Sensitivity analysis across maps of habitat connectivity
sensitivity_analysis	Sensitivity analysis for habitat connectivity
setmaps	Gmap class
setmaps-method	Sets the map slots in the Gmap object.
setprops	Set properties of the GeoModel object.
setprops-method	Set properties of the GeoModel object.
set_global_scales	Set global geographical extent
set_parameters	Set Parameters
supported_metrics	Returns metrics currently supported in the analysis.