| aFiles | Get and set aFiles. |
| aFiles-method | Get and set aFiles. |
| aFiles<- | Get and set aFiles. |
| aFiles<--method | Get and set aFiles. |
| assayTab | S4 Class assayTab, initialization methods |
| assayTab-class | S4 Class assayTab, initialization methods |
| getAssayFileNames | Retrieve the Assay File Name(s) per Study from an ISA object. |
| getAssayTabs | Retrieve Assay Tables from an ISA object. |
| getStudyFileNames | Retrieve the Study Identifier(s) and Study File Name(s) from an ISA object. |
| iContacts | Get and set iContacts. |
| iContacts-method | Get and set iContacts. |
| iContacts<- | Get and set iContacts. |
| iContacts<--method | Get and set iContacts. |
| iFileName | Get and set iFileName |
| iFileName-method | Get and set iFileName |
| iFileName<- | Get and set iFileName |
| iFileName<--method | Get and set iFileName |
| initialize-method | S4 Class ISA, initialization method |
| invest | Get and set invest. |
| invest-method | Get and set invest. |
| invest<- | Get and set invest. |
| invest<--method | Get and set invest. |
| iPubs | Get and set iPubs. |
| iPubs-method | Get and set iPubs. |
| iPubs<- | Get and set iPubs. |
| iPubs<--method | Get and set iPubs. |
| ISA | S4 Class ISA, initialization method |
| ISA-class | S4 Class ISA, initialization method |
| ISA-initialize | S4 Class ISA, initialization method |
| isaPath | Get and set path |
| isaPath-method | Get and set path |
| isaPath<- | Get and set path |
| isaPath<--method | Get and set path |
| microarrayAssayTab | S4 Class assayTab, initialization methods |
| microarrayAssayTab-class | S4 Class assayTab, initialization methods |
| msAssayTab | S4 Class assayTab, initialization methods |
| msAssayTab-class | S4 Class assayTab, initialization methods |
| oSR | Get and set oSR |
| oSR-method | Get and set oSR |
| oSR<- | Get and set oSR |
| oSR<--method | Get and set oSR |
| processAssay | Process assay tab data |
| processAssay-method | Process assay tab data |
| readISATab | Read an ISA-Tab dataset into an R object. |
| sAssays | Get and set sAssays. |
| sAssays-method | Get and set sAssays. |
| sAssays<- | Get and set sAssays. |
| sAssays<--method | Get and set sAssays. |
| sContacts | Get and set sContacts. |
| sContacts-method | Get and set sContacts. |
| sContacts<- | Get and set sContacts. |
| sContacts<--method | Get and set sContacts. |
| sDD | Get and set sDD. |
| sDD-method | Get and set sDD. |
| sDD<- | Get and set sDD. |
| sDD<--method | Get and set sDD. |
| sFacts | Get and set sFacts. |
| sFacts-method | Get and set sFacts. |
| sFacts<- | Get and set sFacts. |
| sFacts<--method | Get and set sFacts. |
| sFiles | Get and set sFiles. |
| sFiles-method | Get and set sFiles. |
| sFiles<- | Get and set sFiles. |
| sFiles<--method | Get and set sFiles. |
| sProts | Get and set sProts. |
| sProts-method | Get and set sProts. |
| sProts<- | Get and set sProts. |
| sProts<--method | Get and set sProts. |
| sPubs | Get and set sPubs. |
| sPubs-method | Get and set sPubs. |
| sPubs<- | Get and set sPubs. |
| sPubs<--method | Get and set sPubs. |
| study | Get and set study. |
| study-method | Get and set study. |
| study<- | Get and set study. |
| study<--method | Get and set study. |
| validISAObject | Check the validity of an object of class ISA. |
| writeAssayFiles | Write ISA-Tab object. |
| writeInvestigationFile | Write ISA-Tab object. |
| writeISAtab | Write ISA-Tab object. |
| writeStudyFiles | Write ISA-Tab object. |