Calculate Phenotype Risk Scores
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Documentation for package ‘phers’ version 1.0.2
Help Pages
| demoSample | Sample table of demographic information |
| diseaseDxIcdMap | Mapping of diseases and diagnostic ICD codes |
| diseaseHpoMap | Mapping of Mendelian diseases and their clinical features |
| getDxStatus | Identify cases and controls for Mendelian diseases |
| getGeneticAssociations | Perform association tests between phenotype risk scores and genotypes |
| getPhecodeOccurrences | Map ICD code occurrences to phecode occurrences |
| getResidualScores | Calculate residual phenotype risk scores |
| getScores | Calculate phenotype risk scores |
| getWeights | Calculate phecode-specific weights for phenotype risk scores |
| hpoPhecodeMap | Mapping of HPO terms and phecodes |
| icdPhecodeMap | Mapping of ICD codes and phecodes |
| icdSample | Sample table of ICD occurrences |
| mapDiseaseToPhecode | Map diseases to phecodes via HPO terms |
| preCalcWeights | Pre-calculated weights for calculating phenotype risk scores |