Calculating Topological Properties of Phylogenies
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Documentation for package ‘phyloTop’ version 2.1.2
Help Pages
| avgLadder | Average ladder size |
| cherries | Cherry number |
| colless.phylo | Colless number |
| configShow | Plot a tree highlighting configurations |
| getDepths | Find the depth of each node |
| getLabGenealogy | Create genealogy |
| ILnumber | IL number |
| ladderShow | Show ladders |
| ladderSizes | Ladder sizes |
| makeEpiRecord | Simulate epidemiological record |
| maxHeight | Maximum tree height |
| nConfig | Configuration sizes in a tree |
| nodeDepth | Node depth |
| nodeDepthFrac | Fraction of nodes beyond a given depth |
| nodeImb | Node imbalance |
| nodeImbFrac | Fraction of nodes with given imbalance |
| phyloTop | phyloTop: topological properties of phylogenies |
| pitchforks | Number of pitchforks |
| rtree4 | Random phylo4 tree |
| sackin.phylo | Sackin index |
| splitTop | Split topology |
| stairs | Stairs |
| subtreeShow | Highlight a subtree |
| treeImb | Tree imbalance |
| widths | Number of nodes at each depth |