Generate Starting Trees for Combined Molecular, Morphological
and Stratigraphic Data
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Documentation for package ‘treestartr’ version 0.1.0
Help Pages
| treestartr-package | treestartr: A package for generating reasonable starting trees for phylogenetic analysis. |
| absent_list | bears |
| absent_tippr | Add tips to tree via user input |
| bears | bears |
| dataf_parsr | Detect file format of taxon file |
| echo_rb | Print RevBayes-formatted clade constriants. |
| echo_subtree | Print subtrees with tips added. |
| fileformat | Utility function to check if file is a csv or tsv. |
| genera_strippr | Check if tip is on tree |
| get_found | Get dataframe of tips that do not have congeners on tree. |
| get_lost | Determine if a tip is present on a tree |
| make_absentdf | Determine which tips are not on the tree, and get their genera. |
| make_treedf | Determine which tips are on the tree, and get their genera. |
| mrca_df | bears |
| present_tippr | Add tips to the tree based on taxonomy. |
| rand_absent_tippr | Random addition of taxa |
| taxon_testr | Utility function to check taxon_names in parsed data file |
| tax_frame | bears |
| text_placr | Add tips to tree via taxon list |
| tree | bears |
| treestartr | treestartr: A package for generating reasonable starting trees for phylogenetic analysis. |