| est.GT |
Estimate generation time distribution |
| estimate.R |
Estimate reproduction number (R0 or Rt) for one incidence dataset using available methods |
| generation.time |
Generation Time distribution |
| Germany.1918 |
Germany 1918 dataset |
| GT.chld.hsld |
2009 A/H1N1 observed generation time distribution |
| H1N1.serial.interval |
H1N1 serial interval |
| impute.incid |
Impute censored cases to rebuild longer epidemic vector |
| inspect.data |
Audit input data for common issues |
| integrity.checks |
Integrity checks for input parameters |
| sa.GT |
Sensitivity of R0 to varying generation time distributions |
| sa.time |
Sensitivity of R0 to time estimation windows |
| sensitivity.analysis |
Sensitivity analysis of basic reproduction ratio to begin/end dates |
| sim.epid |
Epidemic outbreak simulation |
| sim.epid.indiv |
Influenza-like illness simulation (individual-based model) |
| smooth.Rt |
Smooth real-time reproduction number over larger time periods |
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