| aspectHeatmap | Heatmap with control over the aspect ratio |
| BootstrapClusterTest | Class "BootstrapClusterTest" |
| BootstrapClusterTest-class | Class "BootstrapClusterTest" |
| cluster3 | Cluster a Dataset Three Ways |
| ClusterTest | Class "ClusterTest" |
| ClusterTest-class | Class "ClusterTest" |
| cutHclust | Get the List of Classes From A Clustering Algorithm |
| cutKmeans | Get the List of Classes From A Clustering Algorithm |
| cutPam | Get the List of Classes From A Clustering Algorithm |
| cutRepeatedKmeans | Get the List of Classes From A Clustering Algorithm |
| distanceMatrix | Distance Matrix Computation |
| GenePCA | Class "GenePCA" |
| GenePCA-class | Class "GenePCA" |
| hclust-class | Class "hclust" |
| hist-method | Class "ClusterTest" |
| identify-method | Class "SamplePCA" |
| image-method | Class "ClusterTest" |
| mahalanobisQC | Using Mahalanobis Distance and PCA for Quality Control |
| Mosaic | Class "Mosaic" |
| Mosaic-class | Class "Mosaic" |
| PCanova | Class "PCanova" |
| PCanova-class | Class "PCanova" |
| pcc | Plot Dendrograms with Color-Coded Labels |
| PerturbationClusterTest | The PerturbationClusterTest Class |
| PerturbationClusterTest-class | The PerturbationClusterTest Class |
| plot-method | Class "SamplePCA" |
| plot-method | Class "GenePCA" |
| plot-method | Class "Mosaic" |
| plot-method | Class "PCanova" |
| plotColoredClusters | Plot Dendrograms with Color-Coded Labels |
| pltree-method | Class "Mosaic" |
| pltree-method | Class "PCanova" |
| predict-method | Class "SamplePCA" |
| repeatedKmeans | Get the List of Classes From A Clustering Algorithm |
| SamplePCA | Class "SamplePCA" |
| SamplePCA-class | Class "SamplePCA" |
| screeplot-method | Class "SamplePCA" |
| summary-method | Class "ClusterTest" |
| summary-method | Class "BootstrapClusterTest" |
| summary-method | The PerturbationClusterTest Class |
| summary-method | Class "SamplePCA" |
| summary-method | Class "Mosaic" |
| summary-method | Class "PCanova" |
| text-method | Class "SamplePCA" |