| chem16S-package | Chemical metrics for microbial communities |
| chem16S | Chemical metrics for microbial communities |
| chem16S-data | 'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial |
| chemlab | Formatted labels for chemical metrics |
| get_metadata | Template function for metadata |
| get_metrics | Calculate chemical metrics of community reference proteomes |
| get_metric_byrank | Chemical metrics for taxa aggregated to a given rank |
| map_taxa | Map taxonomic names to NCBI or GTDB taxonomy |
| mouse.GTDB_220 | 'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial |
| mouse.RDP | 'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial |
| mouse.silva | 'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial |
| physeq | Process 'phyloseq-class' objects to calculate chemical metrics |
| plot_metrics | Plot chemical metrics of community reference proteomes |
| plot_ps_metrics | Process 'phyloseq-class' objects to calculate chemical metrics |
| plot_ps_metrics2 | Process 'phyloseq-class' objects to calculate chemical metrics |
| ps_metrics | Process 'phyloseq-class' objects to calculate chemical metrics |
| ps_taxacounts | Process 'phyloseq-class' objects to calculate chemical metrics |
| read_RDP | Read and filter RDP Classifier output |