Calculate Ecological Information and Diatom Based Indices

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Documentation for package ‘diathor’ version 0.1.5

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cemfgs_rb CEMFGS_RB
dbc_offline DBC (offline)
ddi DDI
des DES
diaThor DiaThor: A package to calculate multiple diatom-based biotic indices
diathor DiaThor: A package to calculate multiple diatom-based biotic indices
diaThorAll Runs all the DiaThor functions in a pipeline
diat_cemfgs_rb Calculate the combined classification of ecological guilds and size classes for diatoms
diat_checkName Searches all the taxa database for the input name
diat_ddi Calculates the Duero Diatom Index (DDI)
diat_des Calculates the Descy Index (DES)
diat_disp Calculates the Diatom Index for Soda Pans (DISP)
diat_diversity Calculate diversity parameters for diatoms using the vegan package
diat_edi Calculates the Ecuador Diatom Index (EDI)
diat_epid Calculates the EPID index (EPID)
diat_getDiatBarcode Loads the 'Diat.Barcode' database into DiaThor in the correct format
diat_guilds Calculate ecological guilds for diatoms
diat_idap Calculates the Indice Diatomique Artois-Picardie (IDAP)
diat_idch Calculates the Swiss Diatom Index (IDCH)
diat_idp Calculates the Pampean Diatom Index (IDP)
diat_ilm Calculates the ILM Index (ILM)
diat_ips Calculates the Specific Polluosensitivity Index (IPS) index
diat_loadData Loads the Data into DiaThor in the correct format
diat_lobo Calculates the Lobo Index (LOBO)
diat_morpho Calculate morphological parameters for diatoms
diat_pbidw Calculates the PBIDW Index (PBIDW)
diat_pdise Calculates the Swedish Phosphorus Diatom Index (PDIse)
diat_sampleData Sample Data
diat_size Calculate size classes for diatoms
diat_sla Calculates the Sladecek Index (SLA)
diat_spear Calculates the SPEAR(herbicides) Index (SPEAR)
diat_taxaList Creates a single list with taxa names from all indices within DiaThor
diat_tdi Calculates the Trophic (TDI) index
diat_vandam Calculates ecological information for diatoms based on the Van Dam classification
disp DISP
edi EDI
epid EPID
idap IDAP
idch ID-CH
idp IDP
ilm ILM
ips IPS
lobo LOBO
pbidw PBIDW
pdise PDISE
sla SLA
spear SPEAR(h)
taxaList taxaList
tdi TDI