| blowfly | Nicholson's blowfly data |
| coef-method | Extract model coefficients from fitode objects |
| coef-method | Extract model coefficients from fitodeMCMC objects |
| confint-method | Calculate confidence intervals from fitode objects for model parameters and their transformations |
| confint-method | Calculate credible intervals from fitodeMCMC objects for model parameters and their transformations |
| fitode | Fit ordinary differential equations model |
| fitode-class | Class "fitode". Result of ode fitting based on Maximum Likelihood Estimation |
| fitodeMCMC | Fit ordinary differential equations model using MCMC |
| fitodeMCMC-class | Class "fitodeMCMC". Result of ode fitting based on Markov Chain Monte Carlo (MCMC) |
| initialize-method | Constructor method of "odemodel" class |
| logLik-method | Extract log-likelihood |
| loglik.ode-class | Class representing log-likelihood models used to fit ode models |
| plot-method | Plot a fitode object |
| plot-method | Plot a fitodeMCMC object |
| plot_internal | Internal function for plotting methods |
| predict-method | Prediction function for fitode objects |
| predict-method | Prediction function for fitodeMCMC objects |
| prior.ode-class | Class representing prior models used to fit ode models |
| profile-method | Profile fitode objects |
| SierraLeone2014 | Data from 2014 Sierra Leone Ebola epidemic |
| simulate-method | simulate fitode objects |
| simulate-method | simulate model objects |
| simulate_internal | Internal function for simulation models |
| stdEr-method | Extract standard error from fitode objects |
| stdEr-method | Extract standard error from fitodeMCMC objects |
| summary-method | Summarize fitode object |
| summary-method | Summarize fitodeMCMC object |
| tumorgrowth | Tumor growth data |
| update-method | Update fitode fits |
| update-method | Update fitodeMCMC fits |
| vcov-method | Extract variance-covariance matrix from fitode objects |
| vcov-method | Extract variance-covariance matrix from fitodeMCMC objects |