Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods

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Documentation for package ‘geoBayes’ version 0.7.4

• DESCRIPTION file.
• Code demos. Use demo() to run them.
• Package NEWS.

Help Pages

geoBayes-package	The 'geoBayes' package
.geoBayes_corrfcn	Spatial correlation used in the geoBayes package
.geoBayes_models	Models used in the geoBayes package
alik_cutoff	Approximate log-likelihood calculation
alik_inla	Log-likelihood approximation
alik_optim	Log-likelihood maximisation
alik_plot	Approximate log-likelihood calculation
bf1skel	Computation of Bayes factors at the skeleton points
bf2new	Compute the Bayes factors at new points
bf2optim	Empirical Bayes estimator
bf2se	Empirical Bayes standard errors
bmbfse	Batch means, Bayes factors standard errors
geoBayes	The 'geoBayes' package
geoBayes_correlation	Spatial correlation used in the geoBayes package
geoBayes_models	Models used in the geoBayes package
linkfcn	Calculate the link function for exponential families
linkinv	Calculate the link function for exponential families
mcmcmake	Convert to an 'mcmc' object
mcsglmm	MCMC samples from the Spatial GLMM
mcsglmm_mala	MCMC samples from the Spatial GLMM
mcstrga	MCMC samples from the transformed Gaussian model
mcstrga_mala	MCMC samples from the transformed Gaussian model
mkpredgrid2d	Make prediction grid
plotbf2	Plot the estimated Bayes factors
revlogreg	Reverse logistic regression estimation
rhizoctonia	Rhizoctonia root rot infections
rsglmm	Simulation from a spatial model
rsgrf	Simulation from a spatial model
rstrga	Simulation from a spatial model
select_proposals	Selection of multiple importance sampling distributions
select_proposals_ENT	Selection of multiple importance sampling distributions
select_proposals_MNX	Selection of multiple importance sampling distributions
select_proposals_SEQ	Selection of multiple importance sampling distributions
spcovariance	Spatial variance-covariance matrix
spcovariance.dist	Spatial variance-covariance matrix
spcovariance.formula	Spatial variance-covariance matrix
spcovariance.numeric	Spatial variance-covariance matrix
sploglik	Spatial log likelihood
sploglik_cross	Spatial log likelihood
stackdata	Combine 'data.frame's
subset.geomcmc	Subset MCMC chain