Handling and Representing Trophic Networks in Space and Time

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Documentation for package ‘metanetwork’ version 0.7.0

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%>% Pipe
append_agg_nets append aggregated networks
append_agg_nets.metanetwork append aggregated networks
attach_layout compute and attach metanetwork layouts
attach_layout.metanetwork compute and attach metanetwork layouts
build_metanet Build metanetwork object
compute_TL compute trophic levels
compute_TL.metanetwork compute trophic levels
diff_plot plot difference network
extract_networks extract networks from a metanetwork object
ggmetanet ggmetanet
ggnet.default Default configuration for ggnet
group_layout.default Default configuration for group-TL-tsne layout
is.metanetwork Test of belonging to class metanetwork
is.metanetwork.metanetwork Test of belonging to class metanetwork
metanet_build_pipe Build and execute 'metanetwork' pipeline
metanet_pipe Execute 'metanetwork' pipeline
metanet_pipe.metanetwork Execute 'metanetwork' pipeline
meta_angola Angola fishery metanetwork metanetwork built from: Angelini & Velho 2011, Data from: Angelini, R., Velho, VF. (2011) Ecosystem structure and trophic analysis of Angolan fishery landings. Scientia Marina 75(2)
meta_norway Norway soil metanetwork metanetwork built from: Calderon-Sanou et al. 2021, Data from: Calderon-Sanou, I., Munkemuller, T., Zinger, L., Schimann, H., Yoccoz, N. G., Gielly, L., ... & Thuiller, W. (2021). Cascading effects of moth outbreaks on subarctic soil food webs. Scientific reports, 11(1), 1-12.
meta_vrtb European vertebrates metanetwork metanetwork built using data from: O'Connor, L. M., Pollock, L. J., Braga, J., Ficetola, G. F., Maiorano, L., Martinez-Almoyna, C., ... & Thuiller, W. (2020). Unveiling the food webs of tetrapods across Europe through the prism of the Eltonian niche. Journal of Biogeography, 47(1), 181-192. and Maiorano, L., Montemaggiori, A., Ficetola, G. F., O'connor, L., & Thuiller, W. (2020). TETRA-EU 1.0: a species-level trophic metaweb of European tetrapods. Global Ecology and Biogeography, 29(9), 1452-1457.
plot_trophicTable Plot trophic groups hierarchy
print print metanetwork
print.metanetwork print metanetwork
TL_tsne.default Default configuration for the diffusion kernel based t-sne
vismetaNetwork vismetaNetwork
visNetwork.default Default configuration for visNetwork