| cALD | Calculation of the D', Wn, and conditional Asymmetric LD Measures |
| drb1.dqb1.demo | Example HLA Genotype Data for DRB1 and DQB1 |
| extractLoci | Extract Locus Information from Supplied Haplotype Data |
| hla.hap.demo | Example Six-Locus HLA Haplotype Data in GL String Format |
| LD.heat.map | Generates heat-maps for four linkage disequilibrium (LD) values (D', Wn, WLoc1/Loc2 and WLoc2/Loc1) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap(). |
| LD.sign.test | Perform the sign test on paired LD values for phased and unphased haplotypes |
| LDWrap | Parser for CSV-formatted GL String Haplotype Data |
| parseGenotypes | Reformat columnnar genotype data to GL String format |
| trimAlleles | Truncate allele names in haplotypes to the specified number of fields. |
| writeVector | Exporting Haplotype Vectors |